I see from Amy Walsh over at DynamicsCare that Microsoft has posted a fix for windows popping under the open screen when using the Remote App features of Terminal server. This is a big deal. We’ve had a few clients going live lately who have had to deal with this. It’s difficult enough to put in a new system but when things seem to keep disappearing it’s really frustrating. Thanks for getting this fixed MS.
Resolution for the Issues with the TS RemoteApp Feature and Microsoft Dynamics GP
Archived post from 2010. Dynamics GP and the links it points to have changed since; check current documentation before relying on version-specific steps.